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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.5.5 (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.309 C 0.191 G 0.191 T 0.309 

MOTIF 1-RVAGRAAAWR STREME-1
letter-probability matrix: alength= 4 w= 10 nsites= 318 E= 7.9e-002
 0.412822 0.101886 0.309233 0.176059
 0.305950 0.366805 0.240742 0.086502
 0.742264 0.000089 0.000089 0.257559
 0.000144 0.000089 0.950325 0.049443
 0.344274 0.000089 0.655494 0.000144
 0.803250 0.196517 0.000089 0.000144
 0.685461 0.092844 0.221552 0.000144
 0.492784 0.153615 0.199162 0.154439
 0.483899 0.000089 0.180583 0.335429
 0.281483 0.007808 0.492301 0.218408

MOTIF 2-ATSGAATGGAATSGA STREME-2
letter-probability matrix: alength= 4 w= 15 nsites= 41 E= 1.2e-001
 0.911787 0.029241 0.029241 0.029731
 0.001278 0.000787 0.029241 0.968694
 0.029731 0.512949 0.399135 0.058185
 0.143545 0.000787 0.854389 0.001278
 0.997147 0.000787 0.000787 0.001278
 0.940240 0.029241 0.029241 0.001278
 0.058185 0.029241 0.000787 0.911787
 0.001278 0.000787 0.968203 0.029731
 0.001278 0.029241 0.939750 0.029731
 0.997147 0.000787 0.000787 0.001278
 0.826427 0.143054 0.000787 0.029731
 0.029731 0.057694 0.000787 0.911787
 0.029731 0.569855 0.313775 0.086638
 0.171999 0.057694 0.740576 0.029731
 0.854880 0.000787 0.000787 0.143545

MOTIF 3-TGAAAACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 2.5e-001
 0.290625 0.000547 0.099374 0.609454
 0.000888 0.000547 0.997676 0.000888
 0.614126 0.099436 0.119213 0.167225
 0.896841 0.000547 0.101724 0.000888
 0.719803 0.090219 0.119213 0.070765
 0.780463 0.119213 0.099436 0.000888
 0.000888 0.997676 0.000547 0.000888
 0.933930 0.048280 0.008725 0.009066

MOTIF 4-AKGCMT STREME-4
letter-probability matrix: alength= 4 w= 6 nsites= 191 E= 1.7e+000
 0.955451 0.000598 0.018696 0.025255
 0.051158 0.000598 0.617791 0.330453
 0.000971 0.139274 0.688675 0.171080
 0.171080 0.688675 0.139274 0.000971
 0.330453 0.617791 0.000598 0.051158
 0.025255 0.018696 0.000598 0.955451

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Stopped because 3 consecutive motifs exceeded the E-value threshold (0.05).
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COMMAND:	streme --verbosity 1 --oc streme_out -dna --minw 6 --maxw 15 --order 0 --bfile ./background --seed 0 --align center --time 4740 --totallength 4000000 --evalue --thresh 0.05 --p MOA24_loss_diff.fa
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CPU:		noble-meme.grid.gs.washington.edu
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FINALTIME:	5.97 seconds
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